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LOC126861494 MED14-independent group 3 enhancer GRCh37_chr12:31886154-31887353 [ Homo sapiens (human) ]

Gene ID: 126861494, updated on 12-Sep-2024

Summary

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Gene symbol
LOC126861494
Gene description
MED14-independent group 3 enhancer GRCh37_chr12:31886154-31887353
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 3 enhancer that depends on the BRD2, BRD4, P300/CBP and CDK7 cofactors, but it has limited or no dependence on the MED14 core Mediator complex subunit. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126861494 in Genome Data Viewer
Location:
chromosome: 12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (31733220..31734419)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (31610070..31611269)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (31886154..31887353)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene antagonist of mitotic exit network 1 homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:31871502-31872009 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:31872010-31872516 Neighboring gene stathmin 1 pseudogene 1 Neighboring gene uncharacterized LOC105369722 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6174 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:31882236-31882868 Neighboring gene CRISPRi-validated cis-regulatory element chr12.953 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4330 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:31901554-31902753 Neighboring gene uncharacterized LOC105369724 Neighboring gene Sharpr-MPRA regulatory region 3097 Neighboring gene IFITM3 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:31919651-31919864 Neighboring gene uncharacterized LOC107984470

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_085993.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    31733220..31734419
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    31610070..31611269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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