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LOC126860621 BRD4-independent group 4 enhancer GRCh37_chr9:35710778-35711977 [ Homo sapiens (human) ]

Gene ID: 126860621, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126860621
Gene description
BRD4-independent group 4 enhancer GRCh37_chr9:35710778-35711977
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (35710781..35711980)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (35731439..35732638)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene skeletal muscle cis-regulatory module in TPM2 intron Neighboring gene tropomyosin 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19873 Neighboring gene talin 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28332 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:35714704-35715608 Neighboring gene microRNA 6852 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:35726478-35727190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:35727191-35727904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28334 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19875 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28336 Neighboring gene microRNA 6853 Neighboring gene cAMP responsive element binding protein 3 Neighboring gene glucosylceramidase beta 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19876

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_085121.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    35710781..35711980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    35731439..35732638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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