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LOC126860573 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:6566198-6567397 [ Homo sapiens (human) ]

Gene ID: 126860573, updated on 12-Sep-2024

Summary

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Gene symbol
LOC126860573
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:6566198-6567397
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126860573 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (6566198..6567397)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (6571250..6572449)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (6566198..6567397)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19765 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28186 Neighboring gene ubiquitin like with PHD and ring finger domains 2 Neighboring gene RNA, 7SL, cytoplasmic 25, pseudogene Neighboring gene glycine decarboxylase Neighboring gene Sharpr-MPRA regulatory region 10661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28187 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:6622908-6623703 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:6630771-6631613 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28191 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:6635584-6636084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:6636085-6636585 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:6644939-6645496 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19769 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28192 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28193 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:6647723-6648278 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:6648279-6648834 Neighboring gene ribosomal protein L23a pseudogene 57 Neighboring gene NANOG hESC enhancer GRCh37_chr9:6656576-6657082 Neighboring gene RNA, 7SL, cytoplasmic 123, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_085073.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    6566198..6567397
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    6571250..6572449
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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