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LOC126831628 calpain-2 catalytic subunit [ Patella vulgata (common limpet) ]

Gene ID: 126831628, updated on 16-Nov-2023

Summary

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Gene symbol
LOC126831628
Gene description
calpain-2 catalytic subunit
See related
EnsemblRapid:ENSPVUG00005023156
Gene type
protein coding
RefSeq status
MODEL
Organism
Patella vulgata
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Patelloidea; Patellidae; Patella
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Genomic context

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See LOC126831628 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_05 current xgPatVulg1.2 (GCF_932274485.2) 9 NC_065887.2 (42930802..42951039)
100 previous assembly xgPatVulg1.1 (GCF_932274485.1) 9 NC_065887.1 (43870555..43892147)

Chromosome 9 - NC_065887.2Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily B member 6 Neighboring gene polyribonucleotide 5'-hydroxyl-kinase Clp1 Neighboring gene contactin-associated protein 1-like Neighboring gene uncharacterized LOC130014300

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-2 catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_932274485.2-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xgPatVulg1.2

Genomic

  1. NC_065887.2 Reference xgPatVulg1.2

    Range
    42930802..42951039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050562211.2 → XP_050418168.1  calpain-2 catalytic subunit

    Related
    ENSPVUP00005027431.1
Nucleotide Protein
Heading Accession and Version

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