U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC126808639 TNF receptor-associated factor 2 [ Patella vulgata (common limpet) ]

Gene ID: 126808639, updated on 16-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC126808639
Gene description
TNF receptor-associated factor 2
See related
EnsemblRapid:ENSPVUG00005020292
Gene type
protein coding
RefSeq status
MODEL
Organism
Patella vulgata
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Patelloidea; Patellidae; Patella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC126808639 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_05 current xgPatVulg1.2 (GCF_932274485.2) 1 NC_065879.2 (12250499..12262819, complement)
100 previous assembly xgPatVulg1.1 (GCF_932274485.1) 1 NC_065879.1 (82751467..82763776)

Chromosome 1 - NC_065879.2Genomic Context describing neighboring genes Neighboring gene glutamine synthetase-like Neighboring gene glutamine synthetase Neighboring gene uncharacterized LOC126808672 Neighboring gene protein CutA homolog Neighboring gene divergent protein kinase domain 1A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_932274485.2-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xgPatVulg1.2

Genomic

  1. NC_065879.2 Reference xgPatVulg1.2

    Range
    12250499..12262819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050533537.2 → XP_050389494.1  TNF receptor-associated factor 2

    Related
    ENSPVUP00005024314.1

  2. XM_050533538.2 → XP_050389495.1  TNF receptor-associated factor 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases