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LOC126807353 CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:34502110-34503309 [ Homo sapiens (human) ]

Gene ID: 126807353, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126807353
Gene description
CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:34502110-34503309
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 2 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on CDK7. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (34502005..34503204)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (34749115..34750314)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900957 Neighboring gene UBX domain protein 2A pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34410484-34411307 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34411308-34412130 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:34412131-34412953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22460 Neighboring gene NANOG hESC enhancer GRCh37_chr5:34416563-34417129 Neighboring gene MPRA-validated peak5221 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22461 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:34482993-34483536 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:34483537-34484079 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22462 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34491019-34491594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22463 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22464 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:34523136-34523659 Neighboring gene uncharacterized LOC124900958 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34526666-34527166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34527167-34527667 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:34564051-34565021 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:34565004-34565218 Neighboring gene uncharacterized LOC105374721

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_083667.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    34502005..34503204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    34749115..34750314
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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