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LOC126807061 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:57506917-57508116 [ Homo sapiens (human) ]

Gene ID: 126807061, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126807061
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:57506917-57508116
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (56640751..56641950)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (60128645..60129833)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377665 Neighboring gene ADP ribosylation factor like GTPase 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:57397246-57397779 Neighboring gene sperm microtubule associated protein 2 like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15451 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:57424181-57424393 Neighboring gene NANOG hESC enhancer GRCh37_chr4:57472386-57472887 Neighboring gene glycine decarboxylase pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15452 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:57501823-57502323 Neighboring gene uncharacterized LOC124900708 Neighboring gene hESC enhancers GRCh37_chr4:57528805-57529620 and GRCh37_chr4:57529621-57530435 Neighboring gene HOP homeobox Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15453 Neighboring gene uncharacterized LOC105377666 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:57559757-57560564

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_083382.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    56640751..56641950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    60128645..60129833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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