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LOC126807054 BRD4-independent group 4 enhancer GRCh37_chr4:55147260-55148459 [ Homo sapiens (human) ]

Gene ID: 126807054, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126807054
Gene description
BRD4-independent group 4 enhancer GRCh37_chr4:55147260-55148459
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (54281093..54282292)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (57769845..57771044)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900925 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55091451-55092278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55092279-55093104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55093933-55094758 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:55099490-55100040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21572 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55100592-55100699 Neighboring gene ribosomal protein L22 pseudogene 13 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55122608-55122834 Neighboring gene platelet derived growth factor receptor alpha Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:55144323-55144846 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55161059-55161251 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:55190909-55191566 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:55191567-55192224 Neighboring gene long intergenic non-protein coding RNA 2283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55405507-55406008 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1578 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1581 Neighboring gene long intergenic non-protein coding RNA 2260

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_083375.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    54281093..54282292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    57769845..57771044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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