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LOC126806160 MED14-independent group 3 enhancer GRCh37_chr2:19580130-19581329 [ Homo sapiens (human) ]

Gene ID: 126806160, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126806160
Gene description
MED14-independent group 3 enhancer GRCh37_chr2:19580130-19581329
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 3 enhancer that depends on the BRD2, BRD4, P300/CBP and CDK7 cofactors, but it has limited or no dependence on the MED14 core Mediator complex subunit. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126806160 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (19380369..19381568)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (19413177..19414376)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19384517-19385018 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19385019-19385518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19404229-19404728 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19428093-19429292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505267-19505860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505861-19506454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19555132-19556097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19556098-19557062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:19557728-19558256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:19563065-19563866 Neighboring gene Sharpr-MPRA regulatory region 3817 Neighboring gene microRNA 4757 Neighboring gene odd-skipped related transcription factor 1 Neighboring gene uncharacterized LOC105373458 Neighboring gene uncharacterized LOC101928196 Neighboring gene long intergenic non-protein coding RNA 1808

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_082484.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    19380369..19381568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    19413177..19414376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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