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LOC126623343 farnesyl pyrophosphate synthase-like [ Malus sylvestris (European crab apple) ]

Gene ID: 126623343, updated on 23-Nov-2023

Summary

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Gene symbol
LOC126623343
Gene description
farnesyl pyrophosphate synthase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC126623343 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current drMalSylv7.2 (GCF_916048215.2) 5 NC_062264.1 (46861059..46865141)

Chromosome 5 - NC_062264.1Genomic Context describing neighboring genes Neighboring gene SEC14 cytosolic factor-like Neighboring gene uncharacterized LOC126623345 Neighboring gene C2 and GRAM domain-containing protein At1g03370-like Neighboring gene protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_062264.1 Chromosome 5 Reference drMalSylv7.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase 1-like; farnesyl pyrophosphate synthase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference drMalSylv7.2 Primary Assembly

Genomic

  1. NC_062264.1 Reference drMalSylv7.2 Primary Assembly

    Range
    46861059..46865141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050292201.1 → XP_050148158.1  farnesyl pyrophosphate synthase-like isoform X1

  2. XM_050292202.1 → XP_050148159.1  farnesyl pyrophosphate synthase 1-like isoform X2

Nucleotide Protein
Heading Accession and Version

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