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Plxnc1 plexin C1 [ Alexandromys fortis (reed vole) ]

Gene ID: 126503723, updated on 18-Sep-2024

Summary

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Gene symbol
Plxnc1
Gene description
plexin C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alexandromys fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Alexandromys
Orthologs
human mouse all
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Genomic context

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See Plxnc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_09 current M_Fortis_MF-2015_v1.1 (GCF_014885135.2) Unplaced Scaffold NW_026067932.1 (2373778..2532798)

NW_026067932.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC126503854 Neighboring gene uncharacterized LOC126503815 Neighboring gene centrosomal protein 83 Neighboring gene uncharacterized LOC126503694 Neighboring gene transmembrane and coiled-coil domain family 3 Neighboring gene uncharacterized LOC126503743

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026067932 Unplaced Scaffold Reference M_Fortis_MF-2015_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014885135.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_Fortis_MF-2015_v1.1

Genomic

  1. NW_026067932.1 Reference M_Fortis_MF-2015_v1.1

    Range
    2373778..2532798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050145566.1 → XP_050001523.1  plexin-C1 isoform X1

  2. XM_050145570.1 → XP_050001527.1  plexin-C1 isoform X4

  3. XM_050145569.1 → XP_050001526.1  plexin-C1 isoform X3

  4. XM_050145572.1 → XP_050001529.1  plexin-C1 isoform X6

  5. XM_050145568.1 → XP_050001525.1  plexin-C1 isoform X2

  6. XM_050145571.1 → XP_050001528.1  plexin-C1 isoform X5

Nucleotide Protein
Heading Accession and Version

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