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Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 [ Alexandromys fortis (reed vole) ]

Gene ID: 126498340, updated on 16-Sep-2024

Summary

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Gene symbol
Otub1
Gene description
OTU deubiquitinase, ubiquitin aldehyde binding 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alexandromys fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Alexandromys
Orthologs
human mouse all
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Genomic context

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See Otub1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_09 current M_Fortis_MF-2015_v1.1 (GCF_014885135.2) Unplaced Scaffold NW_026067909.1 (17156406..17164014, complement)

NW_026067909.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C4 Neighboring gene stress induced phosphoprotein 1 Neighboring gene mono-ADP ribosylhydrolase 1 Neighboring gene fibronectin leucine rich transmembrane protein 1 Neighboring gene uncharacterized LOC126498348 Neighboring gene cytochrome c oxidase subunit 8A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026067909 Unplaced Scaffold Reference M_Fortis_MF-2015_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase OTUB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014885135.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_Fortis_MF-2015_v1.1

Genomic

  1. NW_026067909.1 Reference M_Fortis_MF-2015_v1.1

    Range
    17156406..17164014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050136885.1 → XP_049992842.1  ubiquitin thioesterase OTUB1 isoform X1

  2. XM_050136886.1 → XP_049992843.1  ubiquitin thioesterase OTUB1 isoform X2

  3. XM_050136887.1 → XP_049992844.1  ubiquitin thioesterase OTUB1 isoform X2

Nucleotide Protein
Heading Accession and Version

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