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Plod procollagen lysyl hydroxylase [ Schistocerca gregaria ]

Gene ID: 126295284, updated on 22-May-2024

Summary

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Gene symbol
Plod
Gene description
procollagen lysyl hydroxylase
See related
EnsemblRapid:LOC126295284
Gene type
protein coding
RefSeq status
MODEL
Organism
Schistocerca gregaria
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera; Acrididea; Acridomorpha; Acridoidea; Acrididae; Cyrtacanthacridinae; Schistocerca
Orthologs
fruit fly all
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Genomic context

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See Plod in Genome Data Viewer
Location:
chromosome: 11
Exon count:
18
Annotation release Status Assembly Chr Location
100 current iqSchGreg1.2 (GCF_023897955.1) 11 NC_064930.1 (56511441..57019950)

Chromosome 11 - NC_064930.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC126295017 Neighboring gene serine/arginine repetitive matrix protein 2-like Neighboring gene 5S ribosomal RNA Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene immunoglobulin domain-containing protein oig-4-like Neighboring gene uncharacterized LOC126295292 Neighboring gene uncharacterized LOC126295288 Neighboring gene uncharacterized LOC126295294

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064930.1 Chromosome 11 Reference iqSchGreg1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Schistocerca gregaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iqSchGreg1.2 Primary Assembly

Genomic

  1. NC_064930.1 Reference iqSchGreg1.2 Primary Assembly

    Range
    56511441..57019950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049987713.1 → XP_049843670.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase isoform X1

    Related
    XP_049843670.1, XM_049987713.1

  2. XM_049987714.1 → XP_049843671.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase isoform X2

    Related
    XP_049843671.1, XM_049987714.1

  3. XM_049987715.1 → XP_049843672.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase isoform X3

    Related
    XP_049843672.1, XM_049987715.1
Nucleotide Protein
Heading Accession and Version

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