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LOC126057112 BRD4-independent group 4 enhancer GRCh37_chrY:22299473-22300672 [ Homo sapiens (human) ]

Gene ID: 126057112, updated on 12-Sep-2024

Summary

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Gene symbol
LOC126057112
Gene description
BRD4-independent group 4 enhancer GRCh37_chrY:22299473-22300672
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Aug 2022]
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Genomic context

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See LOC126057112 in Genome Data Viewer
Location:
Yq
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (20137587..20138786)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (21062644..21063843)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (22299473..22300672)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene regulator of chromosome condensation 2 pseudogene 2 Neighboring gene zinc finger protein 886, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrY:22253264-22254463 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrY:22277369-22278568 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrY:22280323-22281522 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrY:22316202-22317401 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrY:22339850-22341049 Neighboring gene zinc finger protein 884, pseudogene Neighboring gene zinc finger protein 885, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_081648.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    20137587..20138786
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    21062644..21063843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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