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LOC126056874 irregular chiasm C-roughest protein [ Helicoverpa armigera (cotton bollworm) ]

Gene ID: 126056874, updated on 29-Mar-2024

Summary

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Gene symbol
LOC126056874
Gene description
irregular chiasm C-roughest protein
Locus tag
B5X24_HaOG204546
See related
EnsemblRapid:LOC110377683 EnsemblRapid:LOC126056874
Gene type
protein coding
RefSeq status
MODEL
Organism
Helicoverpa armigera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa
Also known as
HaOG204546
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Genomic context

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See LOC126056874 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_03 current ASM3070526v1 (GCF_030705265.1) 28 NC_087147.1 (3437638..3533076)
101 previous assembly HaSCD2 (GCF_023701775.1) 31 NC_064806.1 (3345768..3430102)

Chromosome 28 - NC_087147.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein L Neighboring gene uncharacterized LOC135119045 Neighboring gene uncharacterized LOC110377680 Neighboring gene uncharacterized LOC126054104 Neighboring gene uncharacterized LOC135119012 Neighboring gene uncharacterized LOC126056354

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomic analysis of larval and adult Malpighian tubules from the cotton bollworm Helicoverpa armigera. Yuan YY, et al. Insect Sci, 2018 Dec. PMID 29178196
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030705265.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070526v1 Primary Assembly

Genomic

  1. NC_087147.1 Reference ASM3070526v1 Primary Assembly

    Range
    3437638..3533076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064042307.1 → XP_063898377.1  irregular chiasm C-roughest protein isoform X1

  2. XM_064042308.1 → XP_063898378.1  irregular chiasm C-roughest protein isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases