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CAPN3 calpain 3 [ Suncus etruscus (white-toothed pygmy shrew) ]

Gene ID: 126020066, updated on 24-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
See related
EnsemblRapid:ENSSRTG00000024161
Gene type
protein coding
RefSeq status
MODEL
Organism
Suncus etruscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Crocidurinae; Suncus
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current mSunEtr1.pri.cur (GCF_024139225.1) 10 NC_064857.1 (83341888..83389475, complement)

Chromosome 10 - NC_064857.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 106 Neighboring gene glucosidase alpha, neutral C Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064857.1 Chromosome 10 Reference mSunEtr1.pri.cur

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024139225.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSunEtr1.pri.cur

Genomic

  1. NC_064857.1 Reference mSunEtr1.pri.cur

    Range
    83341888..83389475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049781536.1 → XP_049637493.1  calpain-3 isoform X3

    Related
    ENSSRTP00000018961.1, ENSSRTT00000031535.1

  2. XM_049781533.1 → XP_049637490.1  calpain-3 isoform X1

    Related
    ENSSRTP00000018951.1, ENSSRTT00000031512.1

  3. XM_049781534.1 → XP_049637491.1  calpain-3 isoform X2

    Related
    ENSSRTP00000018945.1, ENSSRTT00000031498.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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