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galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125994605, updated on 1-Oct-2024

Summary

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Gene symbol
galnt9
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
See related
EnsemblRapid:ENSSICG00000021626
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
human zebrafish all
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Genomic context

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See galnt9 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 3 NC_090849.1 (13087658..13139879)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061391.1 (13087660..13139879)

Chromosome 3 - NC_090849.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:dkey-112e17.1 Neighboring gene checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase Neighboring gene fibrosin-like 1 Neighboring gene ATPase family AAA domain containing 1a Neighboring gene 5-hydroxytryptamine (serotonin) receptor 7c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090849.1 Reference RoL_Ssco_1.2

    Range
    13087658..13139879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049763976.2 → XP_049619933.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    Related
    ENSSICP00000033006.1, ENSSICT00000040490.1

  2. XM_049763977.2 → XP_049619934.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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