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hs3st1l2 heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125994167, updated on 1-Oct-2024

Summary

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Gene symbol
hs3st1l2
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2
See related
EnsemblRapid:ENSSICG00000004264
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
zebrafish all
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Genomic context

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See hs3st1l2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 3 NC_090849.1 (21420235..21422307, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061391.1 (21420052..21425116, complement)

Chromosome 3 - NC_090849.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulator protein Pur-beta Neighboring gene histone H2A.V Neighboring gene uncharacterized LOC125993983 Neighboring gene RNA (guanine-7-) methyltransferase Neighboring gene protein transport protein Sec24C Neighboring gene calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090849.1 Reference RoL_Ssco_1.2

    Range
    21420235..21422307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049763396.2 → XP_049619353.1  heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2

    Related
    ENSSICP00000003846.1, ENSSICT00000006505.1
Nucleotide Protein Strain
Heading Accession and Version

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