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sgca sarcoglycan, alpha [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125991457, updated on 24-Sep-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 21
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 21 NC_090867.1 (8682516..8693009, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061305.1 (8683892..8693009, complement)

Chromosome 21 - NC_090867.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125991462 Neighboring gene inactive all-trans-retinol 13,14-reductase Neighboring gene collagen, type I, alpha 1b Neighboring gene neurabin-2 Neighboring gene histone-lysine N-methyltransferase PRDM9 Neighboring gene mbt domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090867.1 Reference RoL_Ssco_1.2

    Range
    8682516..8693009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049759377.1 → XP_049615334.1  alpha-sarcoglycan

RNA

  1. XR_011086115.1 RNA Sequence

  2. XR_011086116.1 RNA Sequence

  3. XR_007489280.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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