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LOC125990371 mitochondrial basic amino acids transporter [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125990371, updated on 1-Oct-2024

Summary

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Gene symbol
LOC125990371
Gene description
mitochondrial basic amino acids transporter
See related
EnsemblRapid:ENSSICG00000011333
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
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Genomic context

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See LOC125990371 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 20 NC_090866.1 (9896769..9901841, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061296.1 (9896810..9901851, complement)

Chromosome 20 - NC_090866.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA acetyltransferase 2 Neighboring gene ERH mRNA splicing and mitosis factor Neighboring gene WT1 associated protein Neighboring gene superoxide dismutase 2, mitochondrial Neighboring gene solute carrier family 25 member 47a Neighboring gene thyroxine 5-deiodinase-like Neighboring gene serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090866.1 Reference RoL_Ssco_1.2

    Range
    9896769..9901841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049757492.2 → XP_049613449.1  mitochondrial basic amino acids transporter isoform X2

  2. XM_049757491.2 → XP_049613448.1  mitochondrial basic amino acids transporter isoform X1

    Related
    ENSSICP00000014547.1, ENSSICT00000019699.1
Nucleotide Protein Strain
Heading Accession and Version

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