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LOC125988471 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125988471, updated on 1-Oct-2024

Summary

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Gene symbol
LOC125988471
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
See related
EnsemblRapid:ENSSICG00000024307
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
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Genomic context

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See LOC125988471 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 2 NC_090848.1 (2308282..2312110, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061295.1 (2308130..2312110, complement)

Chromosome 2 - NC_090848.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 513 Neighboring gene phospholipase A and acyltransferase 1-like Neighboring gene chloride channel, voltage-sensitive 4 Neighboring gene CLIP-associating protein 1-A Neighboring gene U4atac minor spliceosomal RNA Neighboring gene zinc finger protein GLI2-like Neighboring gene uncharacterized LOC125988482

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090848.1 Reference RoL_Ssco_1.2

    Range
    2308282..2312110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049753742.2 → XP_049609699.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Related
    ENSSICP00000036584.1, ENSSICT00000045636.1

  2. XM_068650003.1 → XP_068506104.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

  3. XM_068650002.1 → XP_068506103.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

  4. XM_049753743.2 → XP_049609700.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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