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kirrel1b kirre like nephrin family adhesion molecule 1b [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125985142, updated on 1-Oct-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
EnsemblRapid:ENSSICG00000022481
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 17 NC_090863.1 (9504475..9529705, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061263.1 (9504475..9529705, complement)

Chromosome 17 - NC_090863.1Genomic Context describing neighboring genes Neighboring gene purine nucleoside phosphorylase Neighboring gene kelch-like protein 10 Neighboring gene uncharacterized LOC125985290 Neighboring gene cell adhesion molecule 3 Neighboring gene succinate dehydrogenase complex, subunit C, integral membrane protein Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090863.1 Reference RoL_Ssco_1.2

    Range
    9504475..9529705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049747740.1 → XP_049603697.1  kin of IRRE-like protein 1b isoform X2

    Related
    ENSSICP00000033995.1, ENSSICT00000042143.1

  2. XM_049747739.1 → XP_049603696.1  kin of IRRE-like protein 1b isoform X1

    Related
    ENSSICP00000033991.1, ENSSICT00000042139.1
Nucleotide Protein Strain
Heading Accession and Version

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