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LOC125984495 beta-1,3-galactosyltransferase 2 [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125984495, updated on 1-Oct-2024

Summary

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Gene symbol
LOC125984495
Gene description
beta-1,3-galactosyltransferase 2
See related
EnsemblRapid:ENSSICG00000025150
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
zebrafish all
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Genomic context

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See LOC125984495 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 17 NC_090863.1 (4748137..4757632, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061263.1 (4748137..4757632, complement)

Chromosome 17 - NC_090863.1Genomic Context describing neighboring genes Neighboring gene regulator of G-protein signaling 21-like Neighboring gene regulator of G protein signaling 1 Neighboring gene Ro60, Y RNA binding protein Neighboring gene cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Neighboring gene complement factor H-related protein 1-like Neighboring gene transmembrane protein 275a Neighboring gene glutamate-ammonia ligase (glutamine synthase) a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090863.1 Reference RoL_Ssco_1.2

    Range
    4748137..4757632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049746404.1 → XP_049602361.1  beta-1,3-galactosyltransferase 2

    Related
    ENSSICP00000037601.1, ENSSICT00000047211.1
Nucleotide Protein Strain
Heading Accession and Version

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