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tcap titin-cap (telethonin) [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125983395, updated on 1-Oct-2024

Summary

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Gene symbol
tcap
Gene description
titin-cap (telethonin)
See related
EnsemblRapid:ENSSICG00000020942
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
zebrafish all
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Genomic context

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See tcap in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 16 NC_090862.1 (4800207..4801440, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061253.1 (4800207..4801442, complement)

Chromosome 16 - NC_090862.1Genomic Context describing neighboring genes Neighboring gene reprimo-like Neighboring gene uncharacterized LOC137841036 Neighboring gene melanoregulin Neighboring gene StAR related lipid transfer domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin Z domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of muscle stretch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomerogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle myosin thick filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle thin filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telethonin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090862.1 Reference RoL_Ssco_1.2

    Range
    4800207..4801440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049744591.2 → XP_049600548.1  telethonin

    Related
    ENSSICP00000031836.1, ENSSICT00000039086.1
Nucleotide Protein Strain
Heading Accession and Version

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