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pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125976159, updated on 1-Oct-2024

Summary

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Gene symbol
pomgnt1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
EnsemblRapid:ENSSICG00000026881
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
human zebrafish all
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Genomic context

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See pomgnt1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 10 NC_090856.1 (83154..89695, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061190.1 (83154..89695, complement)

Chromosome 10 - NC_090856.1Genomic Context describing neighboring genes Neighboring gene origin recognition complex, subunit 1 Neighboring gene tetraspanin-1 Neighboring gene golgin, rab6-interacting Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene terminal uridylyl transferase 4 Neighboring gene glutathione peroxidase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090856.1 Reference RoL_Ssco_1.2

    Range
    83154..89695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049732114.1 → XP_049588071.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

  2. XM_049732112.1 → XP_049588069.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

  3. XM_049732111.1 → XP_049588068.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

    Related
    ENSSICP00000039732.1, ENSSICT00000050751.1

  4. XM_049732115.1 → XP_049588072.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

  5. XM_049732113.1 → XP_049588070.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

  6. XM_049732117.1 → XP_049588074.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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