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LOC125975028 plectin [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125975028, updated on 1-Oct-2024

Summary

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Gene symbol
LOC125975028
Gene description
plectin
See related
EnsemblRapid:ENSSICG00000020008
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Also known as
plecb
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Genomic context

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See LOC125975028 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 9 NC_090855.1 (9576935..9648663)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061674.1 (9576933..9647105)

Chromosome 9 - NC_090855.1Genomic Context describing neighboring genes Neighboring gene R-spondin 2 Neighboring gene uncharacterized LOC125975224 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin
Names
plectin b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090855.1 Reference RoL_Ssco_1.2

    Range
    9576935..9648663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049730067.2 → XP_049586024.1  plectin isoform X11

    Related
    ENSSICP00000031567.1, ENSSICT00000038735.1

  2. XM_049730068.2 → XP_049586025.1  plectin isoform X12

  3. XM_049730070.2 → XP_049586027.1  plectin isoform X14

  4. XM_049730071.2 → XP_049586028.1  plectin isoform X15

    Related
    ENSSICP00000031548.1, ENSSICT00000038717.1

  5. XM_049730056.2 → XP_049586013.1  plectin isoform X1

  6. XM_068651896.1 → XP_068507997.1  plectin isoform X1

  7. XM_068651897.1 → XP_068507998.1  plectin isoform X1

  8. XM_049730057.2 → XP_049586014.1  plectin isoform X2

  9. XM_049730075.2 → XP_049586032.1  plectin isoform X19

  10. XM_049730059.2 → XP_049586016.1  plectin isoform X4

    Related
    ENSSICP00000031469.1, ENSSICT00000038637.1

  11. XM_049730060.2 → XP_049586017.1  plectin isoform X5

  12. XM_049730058.2 → XP_049586015.1  plectin isoform X3

    Related
    ENSSICP00000031495.1, ENSSICT00000038663.1

  13. XM_049730061.2 → XP_049586018.1  plectin isoform X6

    Related
    ENSSICP00000031510.1, ENSSICT00000038678.1

  14. XM_049730062.2 → XP_049586019.1  plectin isoform X7

  15. XM_068651898.1 → XP_068507999.1  plectin isoform X20

  16. XM_049730072.2 → XP_049586029.1  plectin isoform X16

    Related
    ENSSICP00000031420.1, ENSSICT00000038587.1

  17. XM_049730073.2 → XP_049586030.1  plectin isoform X17

  18. XM_049730074.2 → XP_049586031.1  plectin isoform X18

    Related
    ENSSICP00000031601.1, ENSSICT00000038770.1

  19. XM_049730063.2 → XP_049586020.1  plectin isoform X8

  20. XM_049730064.2 → XP_049586021.1  plectin isoform X9

  21. XM_049730065.2 → XP_049586022.1  plectin isoform X10

    Related
    ENSSICP00000031407.1, ENSSICT00000038575.1

  22. XM_049730069.2 → XP_049586026.1  plectin isoform X13

Nucleotide Protein Strain
Heading Accession and Version

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