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p3h2 prolyl 3-hydroxylase 2 [ Syngnathus scovelli (Gulf pipefish) ]

Gene ID: 125969480, updated on 1-Oct-2024

Summary

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Gene symbol
p3h2
Gene description
prolyl 3-hydroxylase 2
See related
EnsemblRapid:ENSSICG00000016320
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathus scovelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus
Orthologs
human zebrafish all
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Genomic context

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See p3h2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_09 current RoL_Ssco_1.2 (GCF_024217435.2) 10 NC_090856.1 (6872418..6912547, complement)
RS_2023_02 previous assembly RoL_Ssco_1.1 (GCF_024217435.1) Unplaced Scaffold NW_026061190.1 (6872418..6912549, complement)

Chromosome 10 - NC_090856.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 47 Neighboring gene proline rich Gla (G-carboxyglutamic acid) 1 Neighboring gene coproporphyrinogen oxidase Neighboring gene coiled-coil domain containing 181 Neighboring gene uncharacterized LOC125969904 Neighboring gene claudin-1 Neighboring gene coiled-coil domain containing 50a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024217435.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Ssco_1.2

Genomic

  1. NC_090856.1 Reference RoL_Ssco_1.2

    Range
    6872418..6912547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049721592.2 → XP_049577549.1  prolyl 3-hydroxylase 2

    Related
    ENSSICP00000023874.1, ENSSICT00000029892.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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