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SGCD sarcoglycan delta [ Panthera uncia (snow leopard) ]

Gene ID: 125934506, updated on 22-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera uncia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: A1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current Puncia_PCG_1.0 (GCF_023721935.1) A1 Unlocalized Scaffold NW_026057577.1 (105083682..105643168, complement)

NW_026057577.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC125935915 Neighboring gene methylosome subunit pICln-like Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026057577 Chromosome A1 Unlocalized Scaffold Reference Puncia_PCG_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023721935.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Puncia_PCG_1.0 Primary Assembly

Genomic

  1. NW_026057577.1 Reference Puncia_PCG_1.0 Primary Assembly

    Range
    105083682..105643168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049647926.1 → XP_049503883.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_049647925.1 → XP_049503882.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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