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HSPG2 heparan sulfate proteoglycan 2 [ Lagopus muta (rock ptarmigan) ]

Gene ID: 125703231, updated on 8-May-2024

Summary

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Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
See related
EnsemblRapid:ENSLMUG00000012747
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagopus muta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
Orthologs
human mouse all
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Genomic context

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See HSPG2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
92
Annotation release Status Assembly Chr Location
100 current bLagMut1 primary (GCF_023343835.1) 21 NC_064453.1 (6527531..6558809)

Chromosome 21 - NC_064453.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 269 Neighboring gene chymotrypsin like elastase 3B Neighboring gene uncharacterized LOC125703232 Neighboring gene ubiquitin carboxyl-terminal hydrolase 48 Neighboring gene rap1 GTPase-activating protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064453.1 Chromosome 21 Reference bLagMut1 primary Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagopus muta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bLagMut1 primary Primary Assembly

Genomic

  1. NC_064453.1 Reference bLagMut1 primary Primary Assembly

    Range
    6527531..6558809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048967405.1 → XP_048823362.1  basement membrane-specific heparan sulfate proteoglycan core protein

    Related
    ENSLMUT00000024991.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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