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PKD1 polycystin 1, transient receptor potential channel interacting [ Lagopus muta (rock ptarmigan) ]

Gene ID: 125700989, updated on 8-May-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
See related
EnsemblRapid:ENSLMUG00000018984
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagopus muta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
47
Annotation release Status Assembly Chr Location
100 current bLagMut1 primary (GCF_023343835.1) 15 NC_064447.1 (8925594..9011520)

Chromosome 15 - NC_064447.1Genomic Context describing neighboring genes Neighboring gene RAB26, member RAS oncogene family Neighboring gene uncharacterized LOC125700789 Neighboring gene TSC complex subunit 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene neuropeptide W

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064447.1 Chromosome 15 Reference bLagMut1 primary Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagopus muta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bLagMut1 primary Primary Assembly

Genomic

  1. NC_064447.1 Reference bLagMut1 primary Primary Assembly

    Range
    8925594..9011520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048962382.1 → XP_048818339.1  polycystin-1 isoform X1

  2. XM_048962383.1 → XP_048818340.1  polycystin-1 isoform X2

  3. XM_048962384.1 → XP_048818341.1  polycystin-1 isoform X3

  4. XM_048962385.1 → XP_048818342.1  polycystin-1 isoform X4

    Related
    ENSLMUP00000022881.1, ENSLMUT00000031265.1
Nucleotide Protein
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