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CLEC16A C-type lectin domain containing 16A [ Lagopus muta (rock ptarmigan) ]

Gene ID: 125700946, updated on 8-May-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
See related
EnsemblRapid:ENSLMUG00000017973
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagopus muta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
25
Annotation release Status Assembly Chr Location
100 current bLagMut1 primary (GCF_023343835.1) 15 NC_064447.1 (6271066..6334054)

Chromosome 15 - NC_064447.1Genomic Context describing neighboring genes Neighboring gene class II major histocompatibility complex transactivator Neighboring gene Dexi homolog Neighboring gene suppressor of cytokine signaling 1 Neighboring gene RecQ mediated genome instability 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064447.1 Chromosome 15 Reference bLagMut1 primary Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagopus muta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bLagMut1 primary Primary Assembly

Genomic

  1. NC_064447.1 Reference bLagMut1 primary Primary Assembly

    Range
    6271066..6334054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048962298.1 → XP_048818255.1  protein CLEC16A isoform X1

    Related
    ENSLMUP00000021769.1, ENSLMUT00000029624.1

  2. XM_048962299.1 → XP_048818256.1  protein CLEC16A isoform X2

    Related
    ENSLMUP00000021772.1, ENSLMUT00000029628.1

  3. XM_048962301.1 → XP_048818258.1  protein CLEC16A isoform X3

  4. XM_048962304.1 → XP_048818261.1  protein CLEC16A isoform X5

  5. XM_048962302.1 → XP_048818259.1  protein CLEC16A isoform X4

  6. XM_048962300.1 → XP_048818257.1  protein CLEC16A isoform X3

  7. XM_048962303.1 → XP_048818260.1  protein CLEC16A isoform X5

  8. XM_048962306.1 → XP_048818263.1  protein CLEC16A isoform X6

  9. XM_048962307.1 → XP_048818264.1  protein CLEC16A isoform X7

RNA

  1. XR_007380101.1 RNA Sequence

  2. XR_007380103.1 RNA Sequence

  3. XR_007380102.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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