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LOC125683447 centrosomal protein of 104 kDa-like [ Ostrea edulis ]

Gene ID: 125683447, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125683447
Gene description
centrosomal protein of 104 kDa-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125683447 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 1 NC_079164.1 (70202721..70238655)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026038638.1 (40675522..40712280, complement)

Chromosome 1 - NC_079164.1Genomic Context describing neighboring genes Neighboring gene protein DDI1 homolog 2-like Neighboring gene DNA fragmentation factor subunit beta-like Neighboring gene lisH domain-containing protein ARMC9-like Neighboring gene U4atac minor spliceosomal RNA Neighboring gene zinc finger protein 239-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centrosomal protein of 104 kDa-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079164.1 Reference xbOstEdul1.1

    Range
    70202721..70238655
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048924594.2 → XP_048780551.1  centrosomal protein of 104 kDa-like isoform X1

  2. XM_048924609.2 → XP_048780566.1  centrosomal protein of 104 kDa-like isoform X2

  3. XM_048924615.2 → XP_048780572.1  centrosomal protein of 104 kDa-like isoform X3

  4. XM_048924635.2 → XP_048780592.1  centrosomal protein of 104 kDa-like isoform X5

  5. XM_048924624.2 → XP_048780581.1  centrosomal protein of 104 kDa-like isoform X4

  6. XM_056158635.1 → XP_056014610.1  centrosomal protein of 104 kDa-like isoform X6

  7. XM_048924602.2 → XP_048780559.1  centrosomal protein of 104 kDa-like isoform X1

  8. XM_056158632.1 → XP_056014607.1  centrosomal protein of 104 kDa-like isoform X4

  9. XM_056158620.1 → XP_056014595.1  centrosomal protein of 104 kDa-like isoform X1

Nucleotide Protein
Heading Accession and Version

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