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LOC125681029 E3 ubiquitin-protein ligase CBL-B [ Ostrea edulis ]

Gene ID: 125681029, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125681029
Gene description
E3 ubiquitin-protein ligase CBL-B
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125681029 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 2 NC_079165.1 (97587453..97649692)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026039335.1 (92447396..92507899, complement)

Chromosome 2 - NC_079165.1Genomic Context describing neighboring genes Neighboring gene interleukin-1 receptor accessory protein-like 1 Neighboring gene TBC1 domain family member 23-like Neighboring gene protein AAR2 homolog Neighboring gene uncharacterized LOC125680204 Neighboring gene low-density lipoprotein receptor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of relevant cancer related-genes in the flat oyster Ostrea edulis affected by disseminated neoplasia. Martín-Gómez L, et al. Mar Biotechnol (NY), 2013 Apr. PMID 22833317
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase CBL; E3 ubiquitin-protein ligase CBL-B
Names
Cas-Br-M ecotropic retroviral transforming sequence CBLB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079165.1 Reference xbOstEdul1.1

    Range
    97587453..97649692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048920917.2 → XP_048776874.1  E3 ubiquitin-protein ligase CBL isoform X7

  2. XM_048920912.2 → XP_048776869.1  E3 ubiquitin-protein ligase CBL isoform X1

  3. XM_048920914.2 → XP_048776871.1  E3 ubiquitin-protein ligase CBL isoform X3

  4. XM_048920915.2 → XP_048776872.1  E3 ubiquitin-protein ligase CBL isoform X5

  5. XM_056155693.1 → XP_056011668.1  E3 ubiquitin-protein ligase CBL-B isoform X8

  6. XM_048920913.2 → XP_048776870.1  E3 ubiquitin-protein ligase CBL isoform X2

  7. XM_056155691.1 → XP_056011666.1  E3 ubiquitin-protein ligase CBL isoform X4

  8. XM_048920916.2 → XP_048776873.1  E3 ubiquitin-protein ligase CBL isoform X6

  9. XM_048920919.2 → XP_048776876.1  E3 ubiquitin-protein ligase CBL-B isoform X9

  10. XM_056155694.1 → XP_056011669.1  E3 ubiquitin-protein ligase CBL-B isoform X10

  11. XM_056155695.1 → XP_056011670.1  E3 ubiquitin-protein ligase CBL-B isoform X11

Nucleotide Protein
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