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LOC125680841 GDP-fucose protein O-fucosyltransferase 1-like [ Ostrea edulis ]

Gene ID: 125680841, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125680841
Gene description
GDP-fucose protein O-fucosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125680841 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 2 NC_079165.1 (82705342..82717659, complement)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026039335.1 (73143359..73153098, complement)

Chromosome 2 - NC_079165.1Genomic Context describing neighboring genes Neighboring gene cation channel sperm-associated protein 2-like Neighboring gene neuronal calcium sensor 1-like Neighboring gene uncharacterized LOC125680468 Neighboring gene ribonuclease 3-like Neighboring gene crystallin J1A-like Neighboring gene uncharacterized LOC125679595

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose protein O-fucosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079165.1 Reference xbOstEdul1.1

    Range
    82705342..82717659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048920625.2 → XP_048776582.1  GDP-fucose protein O-fucosyltransferase 1-like

  2. XM_048920624.2 → XP_048776581.1  GDP-fucose protein O-fucosyltransferase 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases