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LOC125668546 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like [ Ostrea edulis ]

Gene ID: 125668546, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125668546
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125668546 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 4 NC_079167.1 (49783379..49835017, complement)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026039113.1 (58873790..58927440, complement)

Chromosome 4 - NC_079167.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125668547 Neighboring gene long-chain-fatty-acid--CoA ligase 5-like Neighboring gene uncharacterized LOC125668558 Neighboring gene uncharacterized LOC125669610 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079167.1 Reference xbOstEdul1.1

    Range
    49783379..49835017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056162835.1 → XP_056018810.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like isoform X1

  2. XM_056162836.1 → XP_056018811.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like isoform X1

  3. XM_056162837.1 → XP_056018812.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like isoform X1

  4. XM_056162839.1 → XP_056018814.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like isoform X2

  5. XM_056162840.1 → XP_056018815.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like isoform X2

Nucleotide Protein
Heading Accession and Version

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