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LOC125668200 laminin subunit alpha-2-like [ Ostrea edulis ]

Gene ID: 125668200, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125668200
Gene description
laminin subunit alpha-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125668200 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
64
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 4 NC_079167.1 (37544034..37615692)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026039113.1 (43102783..43174012, complement)

Chromosome 4 - NC_079167.1Genomic Context describing neighboring genes Neighboring gene cadherin-87A-like Neighboring gene uncharacterized LOC125671368 Neighboring gene uncharacterized protein C8orf76 homolog Neighboring gene trafficking protein particle complex subunit 12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079167.1 Reference xbOstEdul1.1

    Range
    37544034..37615692
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048902031.2 → XP_048757988.2  laminin subunit alpha-2-like isoform X1

  2. XM_048902032.2 → XP_048757989.2  laminin subunit alpha-2-like isoform X2

  3. XM_048902034.2 → XP_048757991.2  laminin subunit alpha-2-like isoform X4

  4. XM_048902035.2 → XP_048757992.2  laminin subunit alpha-2-like isoform X5

  5. XM_048902033.2 → XP_048757990.2  laminin subunit alpha-2-like isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases