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LOC125654580 host cell factor 2-like [ Ostrea edulis ]

Gene ID: 125654580, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125654580
Gene description
host cell factor 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125654580 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 7 NC_079170.1 (86068715..86088009, complement)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026039668.1 (2518569..2538641, complement)

Chromosome 7 - NC_079170.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like Neighboring gene uncharacterized LOC125654500 Neighboring gene uncharacterized LOC125656847 Neighboring gene acid phosphatase type 7-like Neighboring gene transmembrane protein 187-like Neighboring gene protein phosphatase 1H-like Neighboring gene GTPase IMAP family member 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like; host cell factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079170.1 Reference xbOstEdul1.1

    Range
    86068715..86088009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048884557.2 → XP_048740514.2  host cell factor 2-like isoform X3

  2. XM_048884555.2 → XP_048740512.2  host cell factor 1-like isoform X1

  3. XM_056142809.1 → XP_055998784.1  host cell factor 2-like isoform X4

  4. XM_048884556.2 → XP_048740513.2  host cell factor 1-like isoform X2

Nucleotide Protein
Heading Accession and Version

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