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LOC125646314 carbohydrate sulfotransferase 1-like [ Ostrea edulis ]

Gene ID: 125646314, updated on 16-Nov-2023

Summary

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Gene symbol
LOC125646314
Gene description
carbohydrate sulfotransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC125646314 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 6 NC_079169.1 (78009789..78034390, complement)
100 previous assembly OEROSLIN_1.1 (GCF_023158985.2) Unplaced Scaffold NW_026039446.1 (79105732..79129940, complement)

Chromosome 6 - NC_079169.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125646984 Neighboring gene G-protein coupled receptor dmsr-1-like Neighboring gene uncharacterized LOC125647999 Neighboring gene uncharacterized LOC125669451 Neighboring gene multiple epidermal growth factor-like domains protein 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079169.1 Reference xbOstEdul1.1

    Range
    78009789..78034390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048872545.2 → XP_048728502.2  carbohydrate sulfotransferase 1-like isoform X1

  2. XM_056140865.1 → XP_055996840.1  carbohydrate sulfotransferase 1-like isoform X2

Nucleotide Protein
Heading Accession and Version

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