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SGCD sarcoglycan delta [ Caretta caretta (Loggerhead turtle) ]

Gene ID: 125641111, updated on 22-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSCECG00000018095
Gene type
protein coding
RefSeq status
MODEL
Organism
Caretta caretta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Caretta
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
100 current GSC_CCare_1.0 (GCF_023653815.1) 8 NC_064480.1 (3538304..4060538, complement)

Chromosome 8 - NC_064480.1Genomic Context describing neighboring genes Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene mediator complex subunit 7 Neighboring gene small nuclear ribonucleoprotein F-like Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064480.1 Chromosome 8 Reference GSC_CCare_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Caretta caretta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_CCare_1.0 Primary Assembly

Genomic

  1. NC_064480.1 Reference GSC_CCare_1.0 Primary Assembly

    Range
    3538304..4060538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048860561.1 → XP_048716518.1  delta-sarcoglycan

  2. XM_048860563.1 → XP_048716520.1  delta-sarcoglycan

  3. XM_048860564.1 → XP_048716521.1  delta-sarcoglycan

    Related
    ENSCECP00000027359.1, ENSCECT00000031825.1
Nucleotide Protein
Heading Accession and Version

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