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PNPLA4 patatin like phospholipase domain containing 4 [ Caretta caretta (Loggerhead turtle) ]

Gene ID: 125641016, updated on 18-Sep-2024

Summary

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Gene symbol
PNPLA4
Gene description
patatin like phospholipase domain containing 4
See related
EnsemblRapid:ENSCECG00000005833
Gene type
protein coding
RefSeq status
MODEL
Organism
Caretta caretta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Caretta
Orthologs
human all
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Genomic context

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See PNPLA4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
100 current GSC_CCare_1.0 (GCF_023653815.1) 1 NC_064473.1 (129822804..129869130, complement)

Chromosome 1 - NC_064473.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125641012 Neighboring gene steroid sulfatase Neighboring gene uncharacterized LOC125641034 Neighboring gene anosmin 1 Neighboring gene uncharacterized LOC125641055

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064473.1 Chromosome 1 Reference GSC_CCare_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Caretta caretta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_CCare_1.0 Primary Assembly

Genomic

  1. NC_064473.1 Reference GSC_CCare_1.0 Primary Assembly

    Range
    129822804..129869130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048860306.1 → XP_048716263.1  patatin-like phospholipase domain-containing protein 4 isoform X1

    Related
    ENSCECP00000008565.1, ENSCECT00000010027.1

  2. XM_048860324.1 → XP_048716281.1  patatin-like phospholipase domain-containing protein 4 isoform X3

    Related
    ENSCECP00000008564.1, ENSCECT00000010026.1

  3. XM_048860340.1 → XP_048716297.1  patatin-like phospholipase domain-containing protein 4 isoform X5

  4. XM_048860329.1 → XP_048716286.1  patatin-like phospholipase domain-containing protein 4 isoform X4

  5. XM_048860315.1 → XP_048716272.1  patatin-like phospholipase domain-containing protein 4 isoform X2

Nucleotide Protein
Heading Accession and Version

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