U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 [ Caretta caretta (Loggerhead turtle) ]

Gene ID: 125637332, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HMGCS1
Gene description
3-hydroxy-3-methylglutaryl-CoA synthase 1
See related
EnsemblRapid:ENSCECG00000008858
Gene type
protein coding
RefSeq status
MODEL
Organism
Caretta caretta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Caretta
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HMGCS1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
100 current GSC_CCare_1.0 (GCF_023653815.1) 5 NC_064477.1 (28936701..28967630, complement)

Chromosome 5 - NC_064477.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125637335 Neighboring gene zinc finger protein 131 Neighboring gene NIM1 serine/threonine protein kinase Neighboring gene transmembrane protein 267 Neighboring gene chromosome 5 C5orf34 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_064477.1 Chromosome 5 Reference GSC_CCare_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxymethylglutaryl-CoA synthase, cytoplasmic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Caretta caretta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_CCare_1.0 Primary Assembly

Genomic

  1. NC_064477.1 Reference GSC_CCare_1.0 Primary Assembly

    Range
    28936701..28967630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048851677.1 → XP_048707634.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1

  2. XM_048851680.1 → XP_048707637.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X3

    Related
    ENSCECP00000013204.1, ENSCECT00000015188.1

  3. XM_048851679.1 → XP_048707636.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X2

    Related
    ENSCECP00000013202.1, ENSCECT00000015182.1

  4. XM_048851678.1 → XP_048707635.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1

  5. XM_048851676.1 → XP_048707633.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1

    Related
    ENSCECP00000013200.1, ENSCECT00000015177.1

RNA

  1. XR_007356906.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.