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SGCG sarcoglycan gamma [ Caretta caretta (Loggerhead turtle) ]

Gene ID: 125634656, updated on 22-Mar-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
EnsemblRapid:ENSCECG00000013729
Gene type
protein coding
RefSeq status
MODEL
Organism
Caretta caretta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Caretta
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
100 current GSC_CCare_1.0 (GCF_023653815.1) 1 NC_064473.1 (39620414..39764267)

Chromosome 1 - NC_064473.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125621070 Neighboring gene zinc finger and SCAN domain-containing protein 32-like Neighboring gene sacsin molecular chaperone Neighboring gene TNF receptor superfamily member 19 Neighboring gene uncharacterized LOC125634755 Neighboring gene mitochondrial intermediate peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064473.1 Chromosome 1 Reference GSC_CCare_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Caretta caretta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_CCare_1.0 Primary Assembly

Genomic

  1. NC_064473.1 Reference GSC_CCare_1.0 Primary Assembly

    Range
    39620414..39764267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048845714.1 → XP_048701671.1  gamma-sarcoglycan isoform X3

  2. XM_048845695.1 → XP_048701652.1  gamma-sarcoglycan isoform X1

    Related
    ENSCECP00000020593.1, ENSCECT00000023948.1

  3. XM_048845703.1 → XP_048701660.1  gamma-sarcoglycan isoform X2

    Related
    ENSCECP00000020584.1, ENSCECT00000023936.1
Nucleotide Protein
Heading Accession and Version

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