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SC5D sterol-C5-desaturase [ Caretta caretta (Loggerhead turtle) ]

Gene ID: 125625513, updated on 22-Mar-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
EnsemblRapid:ENSCECG00000002668
Gene type
protein coding
RefSeq status
MODEL
Organism
Caretta caretta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Caretta
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
100 current GSC_CCare_1.0 (GCF_023653815.1) 21 NC_064493.1 (11151813..11163895, complement)

Chromosome 21 - NC_064493.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125625515 Neighboring gene uncharacterized LOC125625514 Neighboring gene sortilin related receptor 1 Neighboring gene tubulin-specific chaperone cofactor E-like protein Neighboring gene glutamate ionotropic receptor kainate type subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064493.1 Chromosome 21 Reference GSC_CCare_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Caretta caretta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_CCare_1.0 Primary Assembly

Genomic

  1. NC_064493.1 Reference GSC_CCare_1.0 Primary Assembly

    Range
    11151813..11163895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048827669.1 → XP_048683626.1  lathosterol oxidase isoform X2

    Related
    ENSCECP00000003965.1, ENSCECT00000004644.1

  2. XM_048827668.1 → XP_048683625.1  lathosterol oxidase isoform X1

    Related
    ENSCECP00000003964.1, ENSCECT00000004643.1
Nucleotide Protein
Heading Accession and Version

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