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LOC125578464 carboxyl-terminal-processing peptidase 3, chloroplastic-like [ Brassica napus (rape) ]

Gene ID: 125578464, updated on 10-Oct-2024

Summary

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Gene symbol
LOC125578464
Gene description
carboxyl-terminal-processing peptidase 3, chloroplastic-like
Locus tag
HID58_035633
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC125578464 in Genome Data Viewer
Location:
chromosome: A9
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A9 NC_063442.1 (36121643..36129436)

Chromosome A9 - NC_063442.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase I subunit 1 Neighboring gene zinc finger protein WIP2 Neighboring gene arabinogalactan protein 23 Neighboring gene uncharacterized LOC125578200

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063442.1 Chromosome A9 Reference Da-Ae Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 3, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063442.1 Reference Da-Ae Primary Assembly

    Range
    36121643..36129436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048741227.1 → XP_048597184.1  carboxyl-terminal-processing peptidase 3, chloroplastic-like isoform X2

  2. XM_048741226.1 → XP_048597183.1  carboxyl-terminal-processing peptidase 3, chloroplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A816PF63
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases