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LOC125544295 carboxyl-terminal-processing peptidase 1, chloroplastic [ Triticum urartu ]

Gene ID: 125544295, updated on 30-Nov-2023

Summary

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Gene symbol
LOC125544295
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum urartu
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Genomic context

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See LOC125544295 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Tu2.1 (GCF_003073215.2) 3 NC_053024.1 (452284237..452293004, complement)

Chromosome 3 - NC_053024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125544294 Neighboring gene uncharacterized LOC125546863 Neighboring gene uncharacterized LOC125544297 Neighboring gene aspartic proteinase oryzasin-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053024.1 Chromosome 3 Reference Tu2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating homeologs by phasing in the tetraploid wheat transcriptome. Krasileva KV, et al. Genome Biol, 2013 Jun 25. PMID 23800085, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum urartu Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tu2.1 Primary Assembly

Genomic

  1. NC_053024.1 Reference Tu2.1 Primary Assembly

    Range
    452284237..452293004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048707924.1 → XP_048563881.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2

  2. XM_048707922.1 → XP_048563879.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A8R7TVV1

  3. XM_048707921.1 → XP_048563878.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A8R7TVV1

  4. XM_048707923.1 → XP_048563880.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A8R7TVV1

RNA

  1. XR_007299364.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases