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LOC125512121 callose synthase 7-like [ Triticum urartu ]

Gene ID: 125512121, updated on 30-Nov-2023

Summary

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Gene symbol
LOC125512121
Gene description
callose synthase 7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum urartu
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC125512121 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
30
Annotation release Status Assembly Chr Location
100 current Tu2.1 (GCF_003073215.2) 6 NC_053027.1 (2518573..2556924, complement)

Chromosome 6 - NC_053027.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase EXL3-like Neighboring gene putative callose synthase 6 Neighboring gene uncharacterized LOC125516205 Neighboring gene kinesin-like protein KIN-6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053027.1 Chromosome 6 Reference Tu2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating homeologs by phasing in the tetraploid wheat transcriptome. Krasileva KV, et al. Genome Biol, 2013 Jun 25. PMID 23800085, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum urartu Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tu2.1 Primary Assembly

Genomic

  1. NC_053027.1 Reference Tu2.1 Primary Assembly

    Range
    2518573..2556924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048677186.1 → XP_048533143.1  callose synthase 7-like isoform X1

  2. XM_048677187.1 → XP_048533144.1  callose synthase 7-like isoform X2

RNA

  1. XR_007285215.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases