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yggX putative cytoplasmic protein [ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ]

Gene ID: 1254634, updated on 6-Oct-2023

Summary

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Gene symbol
yggX
Gene description
putative cytoplasmic protein
Locus tag
STM3111
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain: LT2, serovar: Typhimurium, sub-species: enterica, culture-collection: ATCC:700720, culture-collection: SGSC:1412, type-material: type strain of Salmonella enterica)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella
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Genomic context

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Sequence:
NC_003197.2 (3269761..3270047)

NC_003197.2Genomic Context describing neighboring genes Neighboring gene putative cytoplasmic protein Neighboring gene putative S-adenosylmethionine-dependent methyltransferase Neighboring gene adenine DNA glycosylase Neighboring gene membrane-bound lytic murein transglycosylase C Neighboring gene MFS family nucleoside transport

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003197.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lack of YggX results in chronic oxidative stress and uncovers subtle defects in Fe-S cluster metabolism in Salmonella enterica. Skovran E, et al. J Bacteriol, 2004 Nov. PMID 15516576, Free PMC Article
  2. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. McClelland M, et al. Nature, 2001 Oct 25. PMID 11677609

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. role in iron trafficking and protection against oxidative stress, and participation in Fe-S cluster repair.
    Title: Lack of YggX results in chronic oxidative stress and uncovers subtle defects in Fe-S cluster metabolism in Salmonella enterica.
Submit: New GeneRIF Correction

General gene information

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regulatory

  • Loc: 3269761-3269766 regulatory_class = ribosome_binding_site

General protein information

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Preferred Names
putative cytoplasmic protein
NP_462027.1
  • similar to E. coli orf, hypothetical protein (AAC75999.1); Blastp hit to AAC75999.1 (91 aa), 94% identity in aa 1 - 91

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003197.2 Reference assembly

    Range
    3269761..3270047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_462027.1 putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

    See identical proteins and their annotated locations for NP_462027.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5T8B9M3, A0A5U1LJQ2, A0A633DJI5, A0A749KQB9
    Conserved Domains (1) summary
    COG2924
    Location:1 → 90
    YggX; Fe-S cluster biosynthesis and repair protein YggX [Inorganic ion transport and metabolism, Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P67617.2

Gene LinkOut

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