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SGCD sarcoglycan delta [ Sphaerodactylus townsendi ]

Gene ID: 125428314, updated on 22-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaerodactylus townsendi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Sphaerodactylidae; Sphaerodactylus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: LG03
Exon count:
13
Annotation release Status Assembly LG Location
100 current MPM_Stown_v2.3 (GCF_021028975.2) LG03 NC_059427.1 (76789300..77346027, complement)

Linkage Group LG03 - NC_059427.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125427808 Neighboring gene mediator complex subunit 7 Neighboring gene uncharacterized LOC125428333 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059427.1 Chromosome LG03 Reference MPM_Stown_v2.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaerodactylus townsendi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MPM_Stown_v2.3

Genomic

  1. NC_059427.1 Reference MPM_Stown_v2.3

    Range
    76789300..77346027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048488180.1 → XP_048344137.1  delta-sarcoglycan isoform X3

  2. XM_048488177.1 → XP_048344134.1  delta-sarcoglycan isoform X2

  3. XM_048488178.1 → XP_048344135.1  delta-sarcoglycan isoform X2

  4. XM_048488181.1 → XP_048344138.1  delta-sarcoglycan isoform X3

  5. XM_048488179.1 → XP_048344136.1  delta-sarcoglycan isoform X3

  6. XM_048488176.1 → XP_048344133.1  delta-sarcoglycan isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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