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Chrna1 cholinergic receptor nicotinic alpha 1 subunit [ Perognathus longimembris pacificus (Pacific pocket mouse) ]

Gene ID: 125349978, updated on 22-Mar-2024

Summary

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Gene symbol
Chrna1
Gene description
cholinergic receptor nicotinic alpha 1 subunit
See related
EnsemblRapid:ENSPLPG00005002493
Gene type
protein coding
RefSeq status
MODEL
Organism
Perognathus longimembris pacificus (sub-species: pacificus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus
Orthologs
human mouse all
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Genomic context

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See Chrna1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM2315922v1 (GCF_023159225.1) 4 NC_063164.1 (49498996..49515804)

Chromosome 4 - NC_063164.1Genomic Context describing neighboring genes Neighboring gene activating transcription factor 2 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene chimerin 1 Neighboring gene WAS/WASL interacting protein family member 1 Neighboring gene uncharacterized LOC125350541 Neighboring gene G protein-coupled receptor 155

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063164.1 Chromosome 4 Reference ASM2315922v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perognathus longimembris pacificus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2315922v1

Genomic

  1. NC_063164.1 Reference ASM2315922v1

    Range
    49498996..49515804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048344232.1 → XP_048200189.1  acetylcholine receptor subunit alpha isoform X1

    Related
    ENSPLPP00005002888.1, ENSPLPT00005003226.1

  2. XM_048344233.1 → XP_048200190.1  acetylcholine receptor subunit alpha isoform X2

    Related
    ENSPLPP00005002890.1, ENSPLPT00005003229.1
Nucleotide Protein
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