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Tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Perognathus longimembris pacificus (Pacific pocket mouse) ]

Gene ID: 125348132, updated on 22-Mar-2024

Summary

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Gene symbol
Tmtc4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
See related
EnsemblRapid:ENSPLPG00005001717
Gene type
protein coding
RefSeq status
MODEL
Organism
Perognathus longimembris pacificus (sub-species: pacificus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus
Orthologs
human mouse all
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Genomic context

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See Tmtc4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM2315922v1 (GCF_023159225.1) 3 NC_063163.1 (7276456..7326855)

Chromosome 3 - NC_063163.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene 60S ribosomal protein L9-like Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063163.1 Chromosome 3 Reference ASM2315922v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perognathus longimembris pacificus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2315922v1

Genomic

  1. NC_063163.1 Reference ASM2315922v1

    Range
    7276456..7326855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048341129.1 → XP_048197086.1  protein O-mannosyl-transferase TMTC4 isoform X1

    Related
    ENSPLPP00005002011.1, ENSPLPT00005002236.1

  2. XM_048341131.1 → XP_048197088.1  protein O-mannosyl-transferase TMTC4 isoform X2

  3. XM_048341130.1 → XP_048197087.1  protein O-mannosyl-transferase TMTC4 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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